Software

HomER
This is a graphical user interface for visualization and analysis of near-infrared spectroscopy data.

FDMD Graphical User Interface
This is a graphical user interface for quick visual display of the results of frequency-domain multi-wavelength multi-distance measurements.

iso2mesh
iso2mesh is a matlab-based meshing toolbox. It can create 3D tetrahedral finite element (FE) mesh from iso-surfaces and 3D binary volumetric images such as thresholded MRI/CT scans.

Monte Carlo Photon Transport
tMCimg uses a Monte Carlo algorithm to model the transport of photons through 3D highly volumes with spatially varying optical properties and arbitrary boundary conditions.

Monte Carlo eXtreme
Monte Carlo eXtreme (MCX) is Monte-Carlo simulation software for modeling photon migration in 3D turbid media. Using GPU-based massively parallel computing techniques, it is extremely fast compared to traditional CPU-based simulation. The acceleration rate is approximately 100 to 300 on a modern graphics card.

PMI Toolbox v2.0
This is an updated version of the toolbox, added on August 21, 2003.

PMI Toolbox v1.0
The toolbox includes numerous algorithms with which to perform the forward and inverse calculations associated with Photon Migration Imaging.

Mie Program
This is the source code. It's poorly documented, but it does the job

NIRSNet - Community Resources

Directory of Research Groups
This page includes an alphabetized list of research groups that work with near-infrared spectroscopy and diffuse optical tomography, as well as links to the groups' Web sites, when applicable.

Instrument Providers
This page includes a list of companies that sell near-infrared spectroscopy and diffuse optical tomography instruments and equipment.

Journals
This page includes a list of both refereed and trade journals devoted to optics and photonics.

References
This page includes links to a variety of references of use to NIRS-DOT researchers.

Software
This page includes links to software packages developed by others in the optics community.

Internal

PMI Lab Resources (Password Required)

MGH Phone Directory