2009
Ahlfors, S. P., Han, J., Lin, F. H., Witzel, T., Belliveau, J. W., Hamalainen, M. S. and Halgren, E. (2009). "Cancellation of EEG and MEG signals generated by extended and distributed sources." Hum Brain Mapp. (PubMed Entry)
Arsava, E. M., Rahman, R., Rosand, J., Lu, J., Smith, E. E., Rost, N. S., Singhal, A. B., Lev, M. H., Furie, K. L., Koroshetz, W. J., Sorensen, A. G. and Ay, H. (2009). "Severity of leukoaraiosis correlates with clinical outcome after ischemic stroke." Neurology 72(16): 1403-10. (PubMed Entry)
Ay, H., Arsava, E.M., Johnston, S.C., Vangel, M., Schwamm, L.H., Furie, K.L., Koroshetz, W.J. and Sorensen, A.G. (2009). "Clinical- and imaging-based prediction of stroke risk after transient ischemic attack: the CIP model." Stroke 40(1): 181-6. (PubMed Entry)
Ay, I., Lu, J., Ay, H. and Gregory Sorensen, A. (2009). "Vagus nerve stimulation reduces infarct size in rat focal cerebral ischemia." Neurosci Lett 459(3): 147-51. (PubMed Entry)
Bakkour, A., Morris, J.C. and Dickerson, B.C. (2009). "The cortical signature of prodromal AD: regional thinning predicts mild AD dementia." Neurology 72(12): 1048-55. (PubMed Entry)
Boas, D. A. and Payne, S. J. (2009). "Comment on ‘Estimating a modified Grubb’s exponent in healthy human brains with near infrared spectroscopy and transcranial Doppler’." Physiol Meas 30: L9-L11.
Bortfeld, H., Fava, E. and Boas, D.A. (2009). "Identifying cortical lateralization of speech processing in infants using near-infrared spectroscopy." Dev Neuropsychol 34(1): 52-65. (PubMed Entry)
Breslin, J.G. and Clark, T. SWAN/SIOC: Alignment Between the SWAN and SIOC Ontologies. Passant A and Ciccarese P (eds.) W3C Interest Group Note, 20 October 2009. World Wide Web Consortium. http://www.w3.org/TR/hcls-swansioc/
Bush, G. (2009). "Attention-Deficit/Hyperactivity Disorder and Attention Networks." Neuropsychopharmacology. (PubMed Entry)
Cho, H., Ryu, S., Ackerman, J.L. and Song, Y.Q. (2009). "Visualization of inhomogeneous local magnetic field gradient due to susceptibility contrast." J Magn Reson 198(1): 88-93. (PubMed Entry)
Chen, Y., Aguirre, A.D., Ruvinskaya, L., Devor, A., Boas, D.A. and Fujimoto, J.G. (2009). "Optical coherence tomography (OCT) reveals depth-resolved dynamics during functional brain activation." J Neurosci Methods 178(1): 162-73. (PubMed Entry)
Clark, T., Luciano, J., Marshall, M.S., Prud’hommeaux, E. and Stephens, S. (eds.) Proceedings of the Workshop on Semantic Web Applications in Scientific Discourse (SWASD 2009), collocated with the 8th International Semantic Web Conference (ISWC-2009), Washington DC, USA, October 26, 2009. (accepted) CEUR Workshop Proceedings 23. CEUR, Aachen, Germany. http://ceur-ws.org.
Clark, T. and Ocana, M. Semantic Web Applications in Neuromedicine (SWAN) Ontology. Passant A and Ciccarese P (eds.) W3C Interest Group Note, 20 October 2009. World Wide Web Consortium. http://www.w3.org/TR/hcls-swan/
Cohen, D. and Halgren, E. (2009). Magnetoencephalography. Encyclopedia of Neuroscience. L. R. Squire. Oxford, Academic Press. 5: 615-622.
Corlosquet, S., Delbru, R. , Clark, T., Polleres, A. and Decker, S. (2009) Produce and Consume Linked Data with Drupal, in The Semantic Web: ISWC 2009: 8^th International Semantic Web Conference, ISWC 2009, Chantilly VA, October 25-29, 2009, Proceedings (Lecture Notes in Computer Science 5823).
Das, S., Goetz, M., Girard, L. and Clark, T. Scientific Publications on Web 3.0. 13th International Conference on Electronic Publishing (ELPUB 2009), 10-12 June 2009, Milan, Italy.
Deng, W., Yang, C., Alagappan, V., Wald, L.L., Boada, F.E. and Stenger, V.A. (2009). "Simultaneous z-shim method for reducing susceptibility artifacts with multiple transmitters." Magn Reson Med 61(2): 255-9. (PubMed Entry)
Diamond, S. G., Perdue, K. L. and Boas, D. A. (2009). "A cerebrovascular response model for functional neuroimaging including dynamic cerebral autoregulation." Math Biosci 220(2): 102-117. (PubMed Entry)
Dickerson, B.C., Bakkour, A., Salat, D.H., Feczko, E., Pacheco, J., Greve, D.N., Grodstein, F., Wright, C.I., Blacker, D., Rosas, H.D., Sperling, R.A., Atri, A., Growdon, J.H., Hyman, B.T., Morris, J.C., Fischl, B. and Buckner, R.L. (2009). "The cortical signature of Alzheimer's disease: regionally specific cortical thinning relates to symptom severity in very mild to mild AD dementia and is detectable in asymptomatic amyloid-positive individuals." Cereb Cortex 19(3): 497-510. (PubMed Entry)
Driver, J., Blankenburg, F., Bestmann, S., Vanduffel, W. and Ruff, C. C. (2009). "Concurrent brain-stimulation and neuroimaging for studies of cognition." Trends Cogn Sci 13(7): 319-327. (PubMed Entry)
Ekstrom, L. B., Roelfsema, P. R., Arsenault, J. T., Kolster, H. and Vanduffel, W. (2009). "Modulation of the Contrast Response Function by Electrical Microstimulation of the Macaque Frontal Eye Field." J Neurosci 29(34): 10683–10694. (PubMed Entry)
Evans, K.C., Dougherty, D.D., Schmid, A.M., Scannell, E., McCallister, A., Benson, H., Dusek, J.A. and Lazar, S.W. (2009). "Modulation of spontaneous breathing via limbic/paralimbic-bulbar circuitry: An event-related fMRI study." Neuroimage. (PubMed Entry)
Fang, J., Jin, Z., Wang, Y., Li, K., Kong, J., Nixon, E.E., Zeng, Y., Ren, Y., Tong, H., Wang, Y., Wang, P. and Hui, K.K. (2009). "The salient characteristics of the central effects of acupuncture needling: limbic-paralimbic-neocortical network modulation." Hum Brain Mapp 30(4): 1196-206. (PubMed Entry)
Fang, Q. and Boas, D. A. (2009). "Monte Carlo Simulation of Photon Migration in 3D Turbid Media Accelerated by Graphics Processing Units." Opt Express 17(22): 20178-20190.
Fang, Q., Carp, S.A., Selb, J., Boverman, G., Zhang, Q., Kopans, D.B., Moore, R.H., Miller, E.L., Brooks, D.H. and Boas, D.A. (2009). "Combined optical imaging and mammography of the healthy breast: optical contrast derived from breast structure and compression." IEEE Trans Med Imaging 28(1): 30-42. (PubMed Entry)
Fischl, B., Stevens, A. A., Rajendran, N., Yeo, B. T., Greve, D. N., Van Leemput, K., Polimeni, J. R., Kakunoori, S., Buckner, R. L., Pacheco, J., Salat, D. H., Melcher, J., Frosch, M. P., Hyman, B. T., Grant, P. E., Rosen, B. R., van der Kouwe, A. J., Wiggins, G. C., Wald, L. L. and Augustinack, J. C. (2009). "Predicting the location of entorhinal cortex from MRI." Neuroimage 47(1): 8-17. (PubMed Entry)
Freiwald, W. A., Tsao, D. Y. and Livingstone, M. S. (2009). "A face feature space in the macaque temporal lobe." Nat Neurosci. (PubMed Entry)
Gow, D.W., Jr., Keller, C.J., Eskandar, E., Meng, N. and Cash, S.S. (2009). "Parallel versus serial processing dependencies in the perisylvian speech network: A Granger analysis of intracranial EEG data." Brain Lang. (PubMed Entry)
Gow, D.W., Jr. and Segawa, J.A. (2009). "Articulatory mediation of speech perception: a causal analysis of multi-modal imaging data." Cognition 110(2): 222-36. (PubMed Entry)
Grant, P. E., Roche-Labarbe, N., Surova, A., Themelis, G., Selb, J., Warren, E. K., Krishnamoorthy, K. S., Boas, D. A. and Franceschini, M. A. (2009). "Increased cerebral blood volume and oxygen consumption in neonatal brain injury." J Cereb Blood Flow Metab 29(10): 1704-1713.
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Greene, J. D. and J. M. Paxton (2009). "Patterns of neural activity associated with honest and dishonest moral decisions." Proc Natl Acad Sci U S A 106(30): 12506-12511. (PubMed Entry)
Greve, D. N. and B. Fischl (2009). "Accurate and robust brain image alignment using boundary-based registration." Neuroimage 48(1): 63-72. (PubMed Entry)
Groza, T., Handschuh, S., Clark, T. and Shum, S.B. A Short Survey of Scientific Discourse Representation Models. Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Chantilly VA, CEUR Workshop Proceedings.
Hadjikhani, N., Joseph, R.M., Manoach, D.S., Naik, P., Snyder, J., Dominick, K., Hoge, R., Van den Stock, J., Flusberg, H.T. and de Gelder, B. (2009). "Body expressions of emotion do not trigger fear contagion in autism spectrum disorder." Soc Cogn Affect Neurosci. (PubMed Entry)
Hadjikhani, N., Kveraga, K., Naik, P. and Ahlfors, S.P. (2009). "Early (M170) activation of face-specific cortex by face-like objects." Neuroreport 20(4): 403-7. (PubMed Entry)
Hedden, T., Van Dijk, K. R., Becker, J. A., Mehta, A., Sperling, R. A., Johnson, K. A. and Buckner, R. L. (2009). "Disruption of functional connectivity in clinically normal older adults harboring amyloid burden." J Neurosci 29(40): 12686-12694. (PubMed Entry)
Holzel, B. K., Carmody, J., Evans, K. C., Hoge, E. A., Dusek, J. A., Morgan, L., Pitman, R. K. and Lazar, S. W. (2009). "Stress reduction correlates with structural changes in the amygdala." Soc Cogn Affect Neurosci. (PubMed Entry)
Hui, K. K., O. Marina, et al. (2009). "Acupuncture mobilizes the brain's default mode and its anti-correlated network in healthy subjects." Brain Res 1287: 84-103. (PubMed Entry)
Huppert, T.J., Allen, M.S., Diamond, S.G. and Boas, D.A. (2009). "Estimating cerebral oxygen metabolism from fMRI with a dynamic multicompartment Windkessel model." Hum Brain Mapp 30(5): 1548-67. (PubMed Entry)
Huppert, T.J., Diamond, S.G., Franceschini, M.A. and Boas, D.A. (2009). "HomER: a review of time-series analysis methods for near-infrared spectroscopy of the brain." Appl Opt 48(10): D280-98. (PubMed Entry)
Huppert, T. J., Jones, P. B., Devor, A., Dunn, A. K., Teng, I. C., Dale, A. M. and Boas, D. A. (2009). "Sensitivity of neural-hemodynamic coupling to alterations in cerebral blood flow during hypercapnia." J Biomed Opt 14(4): 044038. (PubMed Entry)
Joly, O., Vanduffel, W. and Orban, G. A. (2009). "The monkey ventral premotor cortex processes 3D shape from disparity." Neuroimage 47(1): 262-272. (PubMed Entry)
Keller, C.J., Cash, S.S., Narayanan, S., Wang, C., Kuzniecky, R., Carlson, C., Devinsky, O., Thesen, T., Doyle, W., Sassaroli, A., Boas, D.A., Ulbert, I. and Halgren, E. (2009). "Intracranial microprobe for evaluating neuro-hemodynamic coupling in unanesthetized human neocortex." J Neurosci Methods 179: 208-218.
Kensinger, E. A. (2009). "What factors need to be considered to understand emotional memories?" Emot Rev 1: 116-118.
Kensinger, E. A. (2009). "Remembering the Details: Effects of Emotion." Emot Rev 1(2): 99-113. (PubMed Entry)
Kensinger, E. A. (2009). "How emotion affects older adults' memories for event details." Memory 17(2): 208-19. (PubMed Entry)
Kensinger, E. A. and Choi, E. S. (2009). "When side matters: Hemispheric processing and the visual specificity of emotional memories." J Exp Psychol Learn Mem Cogn 35(1): 247-53. (PubMed Entry)
Kensinger, E. A. and Leclerc, C. M. (2009). "Age-related changes in the neural mechanisms supporting emotion processing and emotional memory." European Journal of Cognitive Psychology 21: 192-215.
Kolster, H., Mandeville, J. B., Arsenault, J. T., Ekstrom, L. B., Wald, L. L. and Vanduffel, W. (2009). "Visual field map clusters in macaque extrastriate visual cortex." J Neurosci 29(21): 7031-7039. (PubMed Entry)
Kong, J., Kaptchuk, T.J., Webb, J.M., Kong, J.T., Sasaki, Y., Polich, G.R., Vangel, M.G., Kwong, K., Rosen, B. and Gollub, R.L. (2009). "Functional neuroanatomical investigation of vision-related acupuncture point specificity--a multisession fMRI study." Hum Brain Mapp 30(1): 38-46. (PubMed Entry)
Kumar, A. T., Chung, E., Raymond, S. B., van de Water, J. A., Shah, K., Fukumura, D., Jain, R. K., Bacskai, B. J. and Boas, D. A. (2009). "Feasibility of in vivo imaging of fluorescent proteins using lifetime contrast." Opt Lett 34(13): 2066-8. (PubMed Entry)
Lebedev, A.Y., Cheprakov, A.V., Sakadzic, S., Boas, D.A., Wilson, D.F. and Vinogradov, S.A. (2009). "Dendritic Phosphorescent Probes for Oxygen Imaging in Biological Systems." Applied Materials & Interfaces.
Liu, H., Agam, Y., Madsen, J.R. and Kreiman, G. (2009). "Timing, timing, timing: Fast decoding of object information from intracranial field potentials in human visual cortex." Neuron 62: 282-290.
Liu, C. H., Ren, J. Q., Yang, J., Liu, C. M., Mandeville, J. B., Rosen, B. R., Bhide, P. G., Yanagawa, Y. and Liu, P. K. (2009). "DNA-based MRI probes for specific detection of chronic exposure to amphetamine in living brains." J Neurosci 29(34): 10663-10670. (PubMed Entry)
Liu, C.H., You, Z., Liu, C.M., Kim, Y.R., Whalen, M.J., Rosen, B.R. and Liu, P.K. (2009). "Diffusion-weighted magnetic resonance imaging reversal by gene knockdown of matrix metalloproteinase-9 activities in live animal brains." J Neurosci 29(11): 3508-17. (PubMed Entry)
Mesquita, R.C., Huppert, T.J. and Boas, D.A. (2009). "Exploring neuro-vascular and neuro-metabolic coupling in rat somatosensory cortex." Phys Med Biol 54(2): 175-85. (PubMed Entry)
Mickley, K. R. and Kensinger, E. A. (2009). "Phenomenological characteristics of emotional memories in younger and older adults." Memory 17(5): 528-43. (PubMed Entry)
Mitchell, J.P., Ames, D.L., Jenkins, A.C. and Banaji, M.R. (2009). "Neural correlates of stereotype application." J Cogn Neurosci 21(3): 594-604. (PubMed Entry)
Muehlschlegel, S., J. Selb, M. Patel, S. G. Diamond, M. A. Franceschini, A. G. Sorensen, D. A. Boas and L. H. Schwamm (2009). "Feasibility of NIRS in the Neurointensive Care Unit: A Pilot Study in Stroke Using Physiological Oscillations." Neurocrit Care. (PubMed Entry)
Nandigam, R.N., Viswanathan, A., Delgado, P., Skehan, M.E., Smith, E.E., Rosand, J., Greenberg, S.M. and Dickerson, B.C. (2009). "MR imaging detection of cerebral microbleeds: effect of susceptibility-weighted imaging, section thickness, and field strength." AJNR Am J Neuroradiol 30(2): 338-43. (PubMed Entry)
Ou, W., Nissila, I., Radhakrishnan, H., Boas, D.A., Hamalainen, M.S. and Franceschini, M.A. (2009). "Study of neurovascular coupling in humans via simultaneous magnetoencephalography and diffuse optical imaging acquisition." Neuroimage 46(3): 624–632. (PubMed Entry)
Passant, A., Ciccarese, P., Breslin, J., Clark, T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics. Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Chantilly VA, CEUR Workshop Proceedings.
Payne, S. J., Selb, J. and Boas, D. A. (2009). "Effects of autoregulation and CO2 reactivity on cerebral oxygen transport." Ann Biomed Eng 37(11): 2288-2298. (PubMed Entry)
Postelnicu, G., Zollei, L. and Fischl, B. (2009). "Combined volumetric and surface registration." IEEE Trans Med Imaging 28(4): 508-22. (PubMed Entry)
Radhakrishnan, H., Vanduffel, W., Deng, H.P., Ekstrom, L., Boas, D.A. and Franceschini, M.A. (2009). "Fast optical signal not detected in awake behaving monkeys." Neuroimage 45(2): 410-419. (PubMed Entry)
Rajimehr, R. and Tootell, R. B. (2009). "Does retinotopy influence cortical folding in primate visual cortex?" J Neurosci 29(36): 11149-11152. (PubMed Entry)
Rajimehr, R., Young, J.C. and Tootell, R.B. (2009). "An anterior temporal face patch in human cortex, predicted by macaque maps." Proc Natl Acad Sci U S A 106(6): 1995-2000. (PubMed Entry)
Raymond, S. B., Kumar, A. T., Boas, D. A. and Bacskai, B. J. (2009). "Optimal parameters for near infrared fluorescence imaging of amyloid plaques in Alzheimer's disease mouse models." Phys Med Biol 54(20): 6201-6216. (PubMed Entry)
Roche-Labarbe, N., S. A. Carp, A. Surova, M. Patel, D. A. Boas, P. E. Grant and M. A. Franceschini (2009). "Noninvasive optical measures of CBV, StO(2), CBF index, and rCMRO(2) in human premature neonates' brains in the first six weeks of life." Hum Brain Mapp. (PubMed Entry)
Sahyoun, C. P., Soulieres, I., Belliveau, J. W., Mottron, L. and Mody, M. (2009). "Cognitive differences in pictorial reasoning between high-functioning autism and Asperger's syndrome." J Autism Dev Disord 39(7): 1014-1023. (PubMed Entry)
Sakadžić, S., Yuan, S., Dilekoz, E., Ruvinskaya, S., Vinogradov, S.A., Ayata, C. and Boas, D.A. (2009). "Simultaneous imaging of cerebral partial pressure of oxygen and blood flow during functional activation and cortical spreading depression." Appl Opt 48(10): D169-D177.
Schaechter, J. D., Z. P. Fricker, et al. (2009). "Microstructural status of ipsilesional and contralesional corticospinal tract correlates with motor skill in chronic stroke patients." Hum Brain Mapp. (PubMed Entry)
Schytz, H.W., Wienecke, T., Jensen, L.T., Selb, J., Boas, D.A. and Ashina, M. (2009). "Changes in cerebral blood flow after acetazolamide: an experimental study comparing near-infrared spectroscopy and SPECT." Eur J Neurol. (PubMed Entry)
Setsompop, K., Alagappan, V., Gagoski, B.A., Potthast, A., Hebrank, F., Fontius, U., Schmitt, F., Wald, L.L. and Adalsteinsson, E. (2009). "Broadband slab selection with B1+ mitigation at 7T via parallel spectral-spatial excitation." Magn Reson Med 61(2): 493-500. (PubMed Entry)
Sperling, R. A., Laviolette, P. S., O'Keefe, K., O'Brien, J., Rentz, D. M., Pihlajamaki, M., Marshall, G., Hyman, B. T., Selkoe, D. J., Hedden, T., Buckner, R. L., Becker, J. A. and Johnson, K. A. (2009). "Amyloid deposition is associated with impaired default network function in older persons without dementia." Neuron 63(2): 178-188. (PubMed Entry)
Srinivasan, V. J., Sakadzic, S., Gorczynska, I., Ruvinskaya, S., Wu, W., Fujimoto, J. G. and Boas, D. A. (2009). "Depth-resolved microscopy of cortical hemodynamics with optical coherence tomography." Opt Lett 34(20): 3086-3088. (PubMed Entry)
Tokuda, J., Schmitt, M., Sun, Y., Patz, S., Tang, Y., Mountford, C.E., Hata, N., Wald, L.L. and Hatabu, H. (2009). "Lung motion and volume measurement by dynamic 3D MRI using a 128-channel receiver coil." Acad Radiol 16(1): 22-7. (PubMed Entry)
Van Leemput, K., Bakkour, A., Benner, T., Wiggins, G., Wald, L. L., Augustinack, J., Dickerson, B. C., Golland, P. and Fischl, B. (2009). "Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI." Hippocampus 19(6): 549-57. (PubMed Entry)
Visscher, K.M., Kahana, M.J. and Sekuler, R. (2009). "Trial-to-trial carryover in auditory short-term memory." J Exp Psychol Learn Mem Cogn 35(1): 46-56. (PubMed Entry)
Waring, J. D. and Kensinger, E. A. (2009). "Effects of emotional valence and arousal upon memory trade-offs with aging." Psychol Aging 24(2): 412-22. (PubMed Entry)
Wig, G.S., Buckner, R.L. and Schacter, D.L. (2009). "Repetition priming influences distinct brain systems: evidence from task-evoked data and resting-state correlations." J Neurophysiol 101(5): 2632-48. (PubMed Entry)
Wilcox, T., Bortfeld, H., Woods, R., Wruck, E., Armstrong, J. and Boas, D. (2009). "Hemodynamic changes in the infant cortex during the processing of featural and spatiotemporal information." Neuropsychologia 47: 657-662.
Wittenberg, G. F. and Schaechter, J. D. (2009). "The neural basis of constraint-induced movement therapy." Curr Opin Neurol. (PubMed Entry)
Wonderlick, J.S., Ziegler, D.A., Hosseini-Varnamkhasti, P., Locascio, J.J., Bakkour, A., van der Kouwe, A., Triantafyllou, C., Corkin, S. and Dickerson, B.C. (2009). "Reliability of MRI-derived cortical and subcortical morphometric measures: effects of pulse sequence, voxel geometry, and parallel imaging." Neuroimage 44(4): 1324-33. (PubMed Entry)
Yotsumoto, Y., Sasaki, Y., Chan, P., Vasios, C. E., Bonmassar, G., Ito, N., Nanez, J. E., Sr., Shimojo, S. and Watanabe, T. (2009). "Location-specific cortical activation changes during sleep after training for perceptual learning." Curr Biol 19(15): 1278-1282. (PubMed Entry)
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